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gnGenomeSpec Member List This is the complete list of members for gnGenomeSpec, including all inherited members. AddFeature(gnBaseFeature *feat) [virtual] AddHeader(gnBaseHeader *head, const uint32 i=UINT32_MAX) [virtual] AddSpec(gnBaseSpec *spec, const uint32 i=UINT32_MAX) [inline, virtual] Clear() [virtual] Clone() const [inline, virtual] CloneRange(const gnSeqI startI, const gnSeqI len) const [virtual] gnMultiSpec::CloneRange(const uint32 startI, const uint32 len) const=0 [pure virtual] CropEnd(gnSeqI cropLen) [virtual] CropStart(gnSeqI cropLen) [virtual] GetBrokenFeatures(const gnLocation &lt, vector< gnBaseFeature *> &feature_vector) const [virtual] GetContainedFeatures(const gnLocation &lt, vector< gnBaseFeature *> &feature_vector, vector< uint32 > &index_vector) const [virtual] GetFeature(const uint32 i) const [virtual] GetFeatureListLength() const [virtual] GetHeader(const uint32 i) const [inline, virtual] GetHeader(const string &name, uint32 &i) const [virtual] GetHeaderListLength() const [inline, virtual] GetIntersectingFeatures(const gnLocation &lt, vector< gnBaseFeature *> &feature_vector, vector< uint32 > &index_vector) const [virtual] GetLength() const [virtual] GetName() const [inline, virtual] GetSourceName() const [inline, virtual] GetSpec(const uint32 i) const [inline, virtual] GetSpecByBase(const gnSeqI baseI) const [inline, virtual] GetSpecEndBase(const uint32 specI) const [virtual] GetSpecIndexByBase(const gnSeqI baseI) const [virtual] GetSpecIndexByName(const string &name) const [virtual] GetSpecListLength() const [inline, virtual] GetSpecStartBase(const uint32 specI) const [virtual] gnBaseSpec() [inline] gnClone() [inline] gnGenomeSpec() gnGenomeSpec(const gnGenomeSpec &s) gnMultiSpec() [inline] IsCircular() const [inline, virtual] IsReverseComplement() const [inline, virtual] m_circular [protected] m_headerList [protected] m_name [protected] m_reverseComplement [protected] m_sourceName [protected] m_SpecList [protected] MergeFragments(const uint32 startC, const uint32 endC) [virtual] RemoveFeature(const uint32 i) [virtual] RemoveHeader(uint32 i) [virtual] RemoveSpec(uint32 i) [inline, virtual] SeqRead(const gnSeqI start, gnSeqC *buf, uint32 &bufLen, const uint32 contigI) const [virtual] SetCircular(const boolean value) [inline, virtual] SetName(const string &name) [inline, virtual] SetReverseComplement(const boolean value) [virtual] SetSourceName(const string &sourceName) [inline, virtual] ~gnBaseSpec() [inline, virtual] ~gnClone() [inline, virtual] ~gnGenomeSpec() [virtual] ~gnMultiSpec() [inline, virtual]