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gnBaseHeader Class Reference This class provides a general interface to sequence related headers. More... #include <gnBaseHeader.h> Inheritance diagram for gnBaseHeader:: List of all members. Public Methods   gnBaseHeader () virtual  ~gnBaseHeader () virtual gnBaseHeader*  Clone () const=0 virtual string  GetHeader () const=0   Get the header. More... virtual string  GetHeaderName () const=0   Get the header's name, if any. More... virtual uint32  GetLength () const=0   Get the header's length in bytes. More... Detailed Description This class provides a general interface to sequence related headers. Headers commonly precede sequence data in several file formats. In FastA files, the header is on the > line before a contig. In GenBank files, each contig has headers describing authors and other information. In GenBank files, the header name corresponds to the name of the header field. A few genBank header names are: DEFINITION ACCESSION, VERSION, KEYWORDS, SEGMENT, SOURCE, REFERENCE, and COMMENT. Eventually, individual classes may be implemented for each header type. Definition at line 32 of file gnBaseHeader.h. Constructor & Destructor Documentation gnBaseHeader::gnBaseHeader ( ) [inline]   Definition at line 35 of file gnBaseHeader.h. gnBaseHeader::~gnBaseHeader ( ) [inline, virtual]   Definition at line 36 of file gnBaseHeader.h. Member Function Documentation gnBaseHeader * gnBaseHeader::Clone ( ) const [pure virtual]   Reimplemented from gnClone. Reimplemented in gnSourceHeader, and gnStringHeader. string gnBaseHeader::GetHeader ( ) const [pure virtual]   Get the header. Returns: The header as a string. Reimplemented in gnSourceHeader, and gnStringHeader. Referenced by gnGBKSource::Write(), gnFASSource::Write(), and gnDNXSource::Write(). string gnBaseHeader::GetHeaderName ( ) const [pure virtual]   Get the header's name, if any. Returns: The header name as a string. Reimplemented in gnSourceHeader, and gnStringHeader. Referenced by gnMultiSpec::GetHeader(), and gnGBKSource::Write(). uint32 gnBaseHeader::GetLength ( ) const [pure virtual]   Get the header's length in bytes. Returns: The length of the header. Reimplemented in gnSourceHeader, and gnStringHeader. The documentation for this class was generated from the following file: gnBaseHeader.h